This repository contains scripts to recreate the figures from the scmap paper.

Required R libraries

cowplot
scmap
irr
googleVis

Fig. 1

data_bc
data_d
data_e
script
keynote
pdf
jpg

Fig. 2

data_a
data_b
data_cd
script
keynote
pdf
jpg

Fig. S1

data_a
data_b
script
pdf
jpeg

Fig. S2

data_a
data_b
data_c
script
pdf
jpeg

Fig. S3

data_a
data_b
data_c
script
pdf
jpeg

Fig. S4

data_a
data_b
data_c
script
pdf
jpeg

Table S1

data_compression